Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKRSWWAGSRKPPREMLKLSGSDSSQSMNGLEVAPPGLITNFSLAT--------AEQCGQETPLENMLFASFYLLDFILALVGNTLALWLFIRDHKSGTPANVFLMHLAVADLSCVLVLPTRLVYHFSGNHWPFGEIACRLTGFLFYLNMYASIYFLTCISADRFLAIVHPVKSLKLRRPLYAHLACAFLWVVVAVAMAPLLVS-----PQTVQTNHTVVCLQLYREKASHHALVSL-AVAFTFPFITTVTCYLLIIRSLRQGLRVEKRLKT------KAVRMIAIVLAIFLVCFVPYHVNRSVYVLHYRSHGASCATQRILALANRITSCLTSLNGALDPIMYFFVAEKFRHALCNLL-CGKRLKGPPPSFEGKTNESSLSAKSEL |
| 3PQR Chain:A ((1-326)) | ----------------------------MNGTE--GPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGEN-HAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPY-AGVAFYIFTHQGSDFGPIFMTIPAFFAKTSA-------VYNPVIYIMMNKQFRNCMVTTLCCGKN----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PQR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -258732 for 2355 contacts (-109.9/contact) +
2D Compatibility (PS) -31692 + (NN) -17074 + (LL) 2128
1D Compatibility (HY) -28400 + (ID) 3950
Total energy: -337720.0 ( -143.41 by residue)
QMean score : 0.302
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