Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSVGAMKKGVGRAVGLGGGSGCQATEEDPLPNCGACAPGQGGRRWRLPQPAWVEGSSARLWEQATGTGWMDLEASLLPTGPNASNTSDGPDNLTSAGSPPRTGSISYINIIMPSVFGTICLLGIIGNSTVIFAVVKKSKLHWCNNVPDIFIINLSVVDLLF-LLGMPFMIHQLMGNGVWHFGETMCTLITAMDANSQFTSTYILTAMAIDRYLATVHPISSTKFRKPSVATLVICLLWALS-FISITPVWLYARLIPFPGGAV-----GCGIRLPNPDTDLYWFTLYQFFLAFALPFVVITAAYVRILQRMTSSVAPASQRSIR-----LRTKRVTRTAIAICLVFFVCWAPYYVLQLTQLSISRPTLTFVYLYNAAISLGYANSCLNPFVYIVLCET--FRKRLVLSVKPAAQGQLRAVSNAQTADEERTESKGT |
| 2Y01 Chain:A ((14-293)) | ---------------------------------------------------------------------------------------------------------------MSLLMALVVLLIVAGNVLVIAAIGSTQRLQ---TLTNLFITSLACADLVVGLLVVPFG-ATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRA-----YAIASSIISFYIPLLIMIFVALRVYREAKEQ----------SRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNI--VNVFNRDLVPDWLFVAFNWLGYANSAMNPIIY---CRSPDFRKAFKRLLA-------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y01.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199263 for 1875 contacts (-106.3/contact) +
2D Compatibility (PS) -25389 + (NN) 275 + (LL) 6968
1D Compatibility (HY) -26000 + (ID) 3750
Total energy: -247159.0 ( -131.82 by residue)
QMean score : 0.250
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