Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVNLTSMSGFLLMGFSDERKLQILHALVFLVTYLLALTGNLLIITIITVDRRLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMGNGYISLVQCILQVFFFIALASSEVAILTVMSYDRYAAICQPLHYETIMDPRACRHAVIAVWIAGGLSGLMHAAINFSIPLCGKRVIHQFFCDVPQMLKL----ACSYEFINEIALAAFTTSAAF-ICLISIVLSYIRIF----STVLRIPSAEGRTKVFSTCLPHLFVATFFLSAAGFEFLRLP---------SDSSSTVDLVFSVFYTV--IPPTLNPVIYSLRNDSMKAALRKMLSKEELPQRKMCLKAMFKL |
2YCY Chain:A ((10-299)) | ----------------WEAGMSLLMALVVL----LIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWA-------ISALVSF-LPI----MMHWWRDEDPQALKCYQDPGCC-DFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIR--DRASKRKRVM-LMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -227464 for 1888 contacts (-120.5/contact) +
2D Compatibility (PS) -27702 + (NN) -7621 + (LL) 3936
1D Compatibility (HY) -25200 + (ID) 3450
Total energy: -287501.0 ( -152.28 by residue)
QMean score : 0.215
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