Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSISNITVYMPSVLTLVGIPGLESVQCWIGIPFCAIYLIAMIG---NSLLLSIIKSERSLHEPLYIFLGMLGATDI-----ALASSIMPKMLGIFWFNVPEIYFDSCLLQMWFIHTLQGIESGILVAMALDRYVAICYPLRHANIFTHQLVIQIGTMVVLRAAILVAPCLVLIK---------CRFQFY--HTTVISHSYCEHMAIVKLAAANVQVNKIYGLFVAFTVAGFDLTFITLSYIQIFITVFRLPQKEARFKAFNTCIAHICVFLQFYLLAFFSFFTHRFGSHISPYIHILFSSIYLLVPPFL-------NPLVYGAKTTQIRIHVVKMFCS |
3PQR Chain:A ((44-322)) | -----------------------------------MFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGP-----TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLV-FTVK-------EAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFY-IFTHQ-GSDFGP--------IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCC |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PQR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -215714 for 1783 contacts (-121.0/contact) +
2D Compatibility (PS) -25587 + (NN) -3403 + (LL) 4452
1D Compatibility (HY) -23600 + (ID) 3300
Total energy: -267152.0 ( -149.83 by residue)
QMean score : 0.207
|
|
|