Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSYFPILFFFFLKRCPSYTEPQNLTGVSEFLLLGLSEDPELQPVLAGLFLSMYLVTVL---GNLLIILAVSSDSHLHTPMYFFLSNLSLADIGFTSTTVPKMIVDMQTHSRVISYEGCLTQMSFFVLFACMDDMLLSVMAYDRFVAICHPLHYRIIMNPRLCGFLILLSFFISLLDSQLHNLIMLQLTCFKDVDISNFFC--DPSQLLHLRCSDTFINEMVIYFMGAIFGCLPISGILF----SYYKIVSPILRVPTSDGK--------YKAFSTCGSHLAVVCL----FYGTGLVGYLSSAVLPSPRKSMVASVMYTVVTPMLNPFIYSLRNKDIQSALCRLHGRIIKSHHLHPFCYMG |
2YCY Chain:A ((10-296)) | -------------------------------------------WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLP--IMMHW--WRDEDPQALKCYQDPG------CCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIR--DRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPD--WLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -206638 for 1874 contacts (-110.3/contact) +
2D Compatibility (PS) -26632 + (NN) -4371 + (LL) 4852
1D Compatibility (HY) -20800 + (ID) 3800
Total energy: -257389.0 ( -137.35 by residue)
QMean score : 0.175
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