Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMEIANVSSPEVFVLLGFSTRPSLETVLFIVVLSFYMVSILGNGIIILVSHTDVHLHTPMYFFLANLPFLDM-----SFTTSIVPQLLAN-LWGPQKTISYGGCVVQFYISHWLGATECVLLATMSYDRYAAICRPLHYTVIMHPQLCLGLALASWLGGLTTSMVGSTLTMLLPLCGNNCIDHFFCEMPLIMQLAC-VDTSLNEMEMYLASFV---FVV---LPLGLILVSYGH----IARAVLKIRSAEGRRKAFNTCSSHVAVVS-------LFYGSIIFMYLQPAKSTSHEQGKF------IALFYTVVTPALNPLIYTLRNTEVKSALRHMVLENCCGSAGKLAQI |
| 2PED Chain:A ((58-326)) | ------------------------------------------NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPT------GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAF-TWVMALACAAP--------PLVGWSRY------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF------THQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNC---MVTTLCCGKNPLGDDE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PED.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -185672 for 1705 contacts (-108.9/contact) +
2D Compatibility (PS) -23529 + (NN) 6176 + (LL) 5964
1D Compatibility (HY) 2000 + (ID) 900
Total energy: -195961.0 ( -114.93 by residue)
QMean score : 0.152
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