Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFL--LAVMAYDRYTAICHPLRYTNLMSPKICGLM-TAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCS-------DTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGM--------------YYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE |
| 2PED Chain:A ((46-327)) | -------------------------YMFLLIMLGFPINFLTLYVTVQ----HKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFAT--LGGEIALWSLVVLAIERYVVVCKPM--SNFRFGENHAIMGVAFTWVMALA--------------CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ--QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPI-FMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PED.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -219024 for 1941 contacts (-112.8/contact) +
2D Compatibility (PS) -26308 + (NN) -3872 + (LL) 3244
1D Compatibility (HY) -800 + (ID) 800
Total energy: -247560.0 ( -127.54 by residue)
QMean score : 0.171
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