Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEEAILLNQTSLVTYFRLRGLSVNHKARIAMFSMFLIF-YVLTLIG---NVLIVITIIYDHRLHTPMYFFLSNLSFIDVCHSTVTVPKMLRDVWSEEKLISFDACVTQMFFLHLFACTEIFLLTVMAYDRYVAICKPLQYMIVMNWKVCVLLAVALWTGGTIHSIALTSLTIKLP-YCGPDEIDNFFCDVPQVIKLAC-ID--TP--------YVLEILIVSNSGLISVVCFVVLVVSYAVILVSLRQQISKGKWKALSTCAAHLTVVTL--------FLGHCIFIYSRPSTSL-PEDKAVSVFFTAVTPLLNPIIYTLRNEEMKSALNKLVGRKERKEEK |
3CAP Chain:A ((32-317)) | --------------------------AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-----NFRF-----------GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -216243 for 1915 contacts (-112.9/contact) +
2D Compatibility (PS) -26293 + (NN) -7117 + (LL) 4944
1D Compatibility (HY) -22800 + (ID) 3050
Total energy: -270559.0 ( -141.28 by residue)
QMean score : 0.212
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