Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNWTAAVTEFVLLGFSLSREVELLLLVLLLPTFLLTLLGNLLIISTVLSCSRLHTPMYFFLCNLSILDILFTSVISPKVLANLGSRDKTI--SFAGCITQCYFYFFLGTVEFLLLTVMSYDRYATICCPLRYTTIM---RPSVCIGTVVFSWVGGFLSVLFPTILISQLPFCGSNIINHFFCDSGPLLALACADTTAIELMDFMLSSMVILCCIVLVAYSYTYIILTIVRIPSASGRKKAFNTCASHLTIVIIPSGITVFIYVTPSQKEYLEINKIPLVLSSVVTPFLNPFIYTLRNDTVQGVLRDVWVRVRGVFEKRMRAVLRSRLSSNKDHQGRACSSPPCVYSVKLQC |
| 2Y00 Chain:A ((6-162)) | -----------------LSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVP-FGATLVVRGTWLWGSFL-CELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTV---WA--------ISALVSFLP-----IMMHWWRDEDP-QALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCRSPDFRKAFKRLLA--------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Y00.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -127905 for 944 contacts (-135.5/contact) +
2D Compatibility (PS) -15153 + (NN) -705 + (LL) 6016
1D Compatibility (HY) -14000 + (ID) 2600
Total energy: -154347.0 ( -163.50 by residue)
QMean score : 0.152
|
|
|