Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MCNQQTRVLISTILCRIAIWYDHMLFIDLVNIISREFCSAKDV-YYNILQLFGIAGLGAMVR-PLGASVFGHIGDRYGRKMALTIAILLISIPSSLVAF-IPGYSRVGITSTILLFAIHVTQGIALGAEQGGSSVYL--------IEHLSNKKKLGMFFGIISFGRSIGVLLFVMIVIIC---KKITDFNAWGWRMPFTFSAIWGLMSAYSIYTLGETPAYEKNREQRNLPNLPIIELVKRYKRALILAVLISVPVNVAVGFTIFLRTIAKEIVQVEMYVTTYVNEIVLIITSILIPISSIALGMLADRVGKE---RIAILFIIITIILCCPMLSIAYYYKSYLIIMLSVMALSIIERGIN---PIGIVASELFPPNVRFSGVSLSRNISFALHGGFTPMICTWLTITFPQINFVAGLYIIFCLLISLIAILQI-----KSQDKNFDW |
| 4QIQ Chain:A ((7-470)) | --SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMT-----LATQAVQEIKHSLDRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QIQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -415014 for 3265 contacts (-127.1/contact) +
2D Compatibility (PS) -41199 + (NN) 5636 + (LL) 688
1D Compatibility (HY) -26000 + (ID) 3600
Total energy: -479489.0 ( -146.86 by residue)
QMean score : 0.248
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