Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQKQYNLGKSLKCKKKSLLTKVKNLLRFQEEKKSVDEKSRDI-----------AKPREIKSEKSIDNKKNELVI----AKIY
1PFS Chain:A ((1-78))
-MNIQITFTDSVRQGT----SAKGNPYTFQEGFLHLEDKPHPLQCQFFVESVIPAGSYQVPYRINVNNGRPELAFDFKAMKRA
General information:
TITO was launched using:
RESULT:
Template:
1PFS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 24792 for 303 contacts (81.8/contact) +
2D Compatibility (PS) -6133 + (NN) 8313 + (LL) 596
1D Compatibility (HY) -2000 + (ID) 600
Total energy: 24968.0 ( 82.40 by residue)
QMean score : 0.030
(partial model without unconserved sides chains):
PDB file :
Tito_1PFS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PFS-query.scw
PDB file :
Tito_Scwrl_1PFS.pdb
: