Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRIGAAPINIPAGVSVECNDGKVLIKSAKAEKELRLCSDIVCQVTDNQLVLSVDQGKDSYNEIKPIWGTYRSNINNIINGIVNGFSVDLEINGIGYKAECDGKYLTLYLGYSHNIKYKVPKDVEIKCIKPTHLVVNGMDKQKVYVIASDICKIRKYDPYKGKGIVIKGKFMLRKVVSKKK
3J8G Chain:G ((2-162))
-SRVAKAP-VVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGP---RDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK-
General information:
TITO was launched using:
RESULT:
Template:
3J8G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79733 for 1148 contacts (-69.5/contact) +
2D Compatibility (PS) -17180 + (NN) -1784 + (LL) 476
1D Compatibility (HY) -7600 + (ID) 2700
Total energy: -108521.0 ( -94.53 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_3J8G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J8G-query.scw
PDB file :
Tito_Scwrl_3J8G.pdb
: