Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKYNNIVKCPIITEKASFLREKFNKYSLYVFVNVNKHKIKSAIESLFNVKVSSINVVRVKPKYRRFKGVVGYEKKKKKVYFSLMDGQKLDIMSV
2D3O Chain:R ((5-92))
-----DILQAPVISEKAYSAMER-GVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRLAEGQSIEALAG
General information:
TITO was launched using:
RESULT:
Template:
2D3O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28440 for 536 contacts (-53.1/contact) +
2D Compatibility (PS) -9682 + (NN) 835 + (LL) 620
1D Compatibility (HY) -4400 + (ID) 1400
Total energy: -42467.0 ( -79.23 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_2D3O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D3O-query.scw
PDB file :
Tito_Scwrl_2D3O.pdb
: