Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKLLKKFYGIIYCLYHALIDTIYNDGMEHAGYLSFLILLSIFPFLIVLMALASTFANFLDQYNIGWTFIIDNMPQDILASLMPRIREIISGPPQSLLTLAIVGAIWTASSTIEGLRTILNKAYKVPVSPPYVLRRILSILQFLIITFIITLTIVFSTLVPMLIDFSYHGLSYTRYLLIEFVLFIVVSWLYFMLPNIRQNVSDVFPGSYIAVMLWTVSASAFKQYLRASFDQLDLIYGSLGGVVVSLLFFYMVSLIFIYGAKFNFQLKCFNGSR |
4PN8 Chain:A ((2-31)) | -----------------------------------------------------------------------------------------------------------------GKIEQILQKIEKILQKIEWILQKIEQILQG----------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PN8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1366 for 110 contacts (-12.4/contact) +
2D Compatibility (PS) -2848 + (NN) 2535 + (LL) 21788
1D Compatibility (HY) -2400 + (ID) 450
Total energy: 17259.0 ( 156.90 by residue)
QMean score : 0.253
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