Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLN--QPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR
4DV1 Chain:I ((3-128))
----QYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEY--FQGLVRAVAALEPLRAVDALGHFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR
General information:
TITO was launched using:
RESULT:
Template:
4DV1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24385 for 850 contacts (-28.7/contact) +
2D Compatibility (PS) -12914 + (NN) -2613 + (LL) 700
1D Compatibility (HY) -8400 + (ID) 3200
Total energy: -50812.0 ( -59.78 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_4DV1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DV1-query.scw
PDB file :
Tito_Scwrl_4DV1.pdb
: