Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNYKQSAEDILNAIGGEENLDAMAHCATRLRLVLNDESLVNEEALNNMDVVKGTFSTGGQYQIIIGSGTVNKVFSELEKLTGKEASTTSEVKAQSAKNMNPLQRFVKMLSDIFVPIIPAIVAGGLLMGLNNILTAKDLFFSGKSLIDVYSQFAGLAEMINVFANAPFTLLPILIGFSAAKRFGGNPFLGAVLGMILVHPSLMSAYDFPKAVEAGKAIPYWDVFGLHINQVGYQGQVLPMLVAAYILASIEKGLRKVIPTVLDNLLTPLLSIFITAFLTFSFVGPITRQLGYWLSDGL---------TWLYEFGGAIGGLIFGLL-------------YAPIVITG------MHHSFIA-VETTLIADATKTGGSFIFPIATMSNVAQGGAAIAAFFIIKQNKKLKGVASAAGISALLGITEPAMFGVNLKLRYPFIGAIVGSGIGSAYIAFFKVKAIALGTAGLPGFISINPVHAGWLHYFVGMTISFIIAITVTLILSKRKANKEVVE |
| 2HT2 Chain:A ((252-449)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVL-MGGAIGGLC-GLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAAS----------IRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLHSAIL------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HT2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -111014 for 1360 contacts (-81.6/contact) +
2D Compatibility (PS) -16556 + (NN) 4215 + (LL) 23264
1D Compatibility (HY) -16800 + (ID) 2500
Total energy: -119391.0 ( -87.79 by residue)
QMean score : 0.050
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