Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METKEKIKVTTIDELTPLIGKKVIVKGKEVGLFLTESGTIHAIHNICPHKQGPLSEGTVSGEYVFCPLHDQKIDLNTGI-VQEPDEGCVDVYEVEVTDGNVYICL
4NBG Chain:D ((6-102))
------LKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYV--
General information:
TITO was launched using:
RESULT:
Template:
4NBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59029 for 713 contacts (-82.8/contact) +
2D Compatibility (PS) -10648 + (NN) -6339 + (LL) 828
1D Compatibility (HY) -5200 + (ID) 1400
Total energy: -81788.0 ( -114.71 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_4NBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NBG-query.scw
PDB file :
Tito_Scwrl_4NBG.pdb
: