Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVPDRRVSKTRAAKRRTHYSVKLAKPV-KAKDGTWK---LPHHINKFTKEY
1LKO Chain:A ((153-179))
------------------------ATKWRCRNCGYVHEGTGAPELCPACAHP
General information:
TITO was launched using:
RESULT:
Template:
1LKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10069 for 96 contacts (104.9/contact) +
2D Compatibility (PS) -2417 + (NN) 898 + (LL) 2052
1D Compatibility (HY) -400 + (ID) 100
Total energy: 10102.0 ( 105.23 by residue)
QMean score : 0.168
(partial model without unconserved sides chains):
PDB file :
Tito_1LKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LKO-query.scw
PDB file :
Tito_Scwrl_1LKO.pdb
: