Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKARFKKRLLGSRGAFDLNIDLEIKEAEVVALLGESGAGKSTILRILAGLEAVSSGYIEANHSVWLDTQKKIFLKPQQRKIGFVFQDYALFPHLNVYQNIAFA-----HPKDK--NKIHEVLRLMRLENLSQQKIPKLSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKRENLSVLLVSHDPNEITKLARTFLFLNNGVIDPNQENRLFSNRLLVKPLFEDENYCHYEVIPQTISLPKDCLNPTFKLDFIQNKKF
2D62 Chain:A ((24-219))
-------------------DLSLEIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAMVFQSYALYPHMTVYDNIAFPLKLRKVPKQEIDKRVREVAEMLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLMDEPLSNLDAKLRVKMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNKGELQQVGTPDEVYYKPVNTFVAGFIGSPPMNFLDATITDDGFLDFGEFKLKLLQDQFE
General information:
TITO was launched using:
RESULT:
Template:
2D62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145298 for 1424 contacts (-102.0/contact) +
2D Compatibility (PS) -19746 + (NN) -2890 + (LL) 1536
1D Compatibility (HY) -18800 + (ID) 3750
Total energy: -188948.0 ( -132.69 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_2D62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D62-query.scw
PDB file :
Tito_Scwrl_2D62.pdb
: