Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIFCGIMSIQAGFIGALAEILSPDSKKNNLFMIPEDLAASSGYLMSLAMVLAGILIICAYRNDFLIFMALILWLFGLIFGLIFTPSYSGFYFRPIVCLISFLMGLFIFTDYTRHQDTGEER------------------------------------------------
3RKO Chain:F ((1-168))
MEFAFYICGLIA-ILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEII-VYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREERAGEVL
General information:
TITO was launched using:
RESULT:
Template:
3RKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47920 for 692 contacts (-69.2/contact) +
2D Compatibility (PS) -12518 + (NN) -3937 + (LL) -116
1D Compatibility (HY) -9200 + (ID) 950
Total energy: -74641.0 ( -107.86 by residue)
QMean score : 0.090
(partial model without unconserved sides chains):
PDB file :
Tito_3RKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RKO-query.scw
PDB file :
Tito_Scwrl_3RKO.pdb
: