Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKKMFVVLALVLSLSLVLMACGGSKDDANSGDSKVLNVWAMGDEAKSLKELAQKFTKDTGIEVKVQVIPWANAHDKLLTAVASKSGPDVVQMGTTWMPEFVEAGALLDITKDVEKSKNMNSDLFFPGSVKTTQFDGKTYGVPWYAETRVLFYRTDLLKKVGYNEAPKTWDELSDAALKLSKR-GKDMYGFAIDPNEQTTGFIFGRQNGSPLFDKDGTPVFNKKP--------------FVDTVTYLDSFIKNGS-APDTDLGLDASQSFGGDGIVPMFMSGPWMVNTLKDTAPDIDGKWATAVLPKKENNESS---LGGANLSIFKYSDKKDDALKFM-DYMSQPDVQLSWLKDTNSMPARMDAWEDDMLKNDPYYKVFGEQMKTAEPMPLIPQFEEIAQLYGKSWEQIYRGGADVQTQMDTFNDQVETLLKK |
| 2FNC Chain:A ((3-373)) | ------------------------------------LTIWCSEKQVDILQKLGEEFKAKYGIPVEVQYVDFGSIKSKFLTAAPQGQGADIIVGAHDWVGELAVNG-LIEPIPNFSDLKN-----FYDTALKAFSYGGKLYGVPYAMEAVALIYNKDYVDSV-----PKTMDELIEKAKQIDEEYGGEVRGFIYD----VANFYF----SAPFILGYGGYVFKETPQGLDVTDIGLANEGAVKGAKLIKRMIDEGVLTPGDNYG--TMDSMFKEGLAAMIINGLWAIKSYKDAGIN----YGVAPIPELEPGVPAKPFVGVQGFMINAKSPNKVIAMEFLTNFIARKETMYKIYLADPRLPARKDVLE--LVKDNPDVVAFTQSASMGTPMPNVPEMAPVWSAMGDALSIIINGQASVEDALKEAVEKIKAQIEK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2FNC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153374 for 2956 contacts (-51.9/contact) +
2D Compatibility (PS) -37463 + (NN) -18302 + (LL) 2988
1D Compatibility (HY) -27200 + (ID) 4600
Total energy: -237951.0 ( -80.50 by residue)
QMean score : 0.546
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