Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKTMAEIQKEVDDFIGGFEEG-YFSPLAMMARITEETGELAREINHYYGEKP---KKTSEPTKTVAEELGDCLFVLTCMANSLDIDMEKAHDTVMAKFKDRDKDRWTKKEEKAK
2A3Q Chain:A ((28-134))
-EPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYLVALAARCHVDLPQAVISKMDTNRQRYPVHLS-------
General information:
TITO was launched using:
RESULT:
Template:
2A3Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16088 for 564 contacts (-28.5/contact) +
2D Compatibility (PS) -10647 + (NN) -1911 + (LL) 804
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -31992.0 ( -56.72 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_2A3Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A3Q-query.scw
PDB file :
Tito_Scwrl_2A3Q.pdb
: