Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMEKKHFDLNDVVEMKKPHPCG-TNRFKIIRMGMDIRIKCEGCGHSVMIPRREFERKVKKILVKAEQE
2VQE Chain:Q ((50-76))
------KYKLGDVVEIIESRPISKRKRFRVLRL------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VQE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4356 for 97 contacts (-44.9/contact) +
2D Compatibility (PS) -2719 + (NN) -835 + (LL) 3796
1D Compatibility (HY) -4000 + (ID) 450
Total energy: -8564.0 ( -88.29 by residue)
QMean score : 0.049
(partial model without unconserved sides chains):
PDB file :
Tito_2VQE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VQE-query.scw
PDB file :
Tito_Scwrl_2VQE.pdb
: