Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDPKKIARINELSKKKKTVGLTGEEKVEQAK---LREEYIEGFRRSVRHHVEGIKLVDD-EGNDVTPEKLRQVQREKGLHGRSLDDPNS
3PRO Chain:C ((9-59))
-----------KFAMQRDLGIFPTQLPQYLQTEKLARTQAAAIEREFGAQFAGSWIERNEDGSFKLVAATSGARKSSTLGGVEVRNVRY
General information:
TITO was launched using:
RESULT:
Template:
3PRO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9075 for 204 contacts (44.5/contact) +
2D Compatibility (PS) -4973 + (NN) -1766 + (LL) 796
1D Compatibility (HY) -400 + (ID) 250
Total energy: 2482.0 ( 12.17 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_3PRO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PRO-query.scw
PDB file :
Tito_Scwrl_3PRO.pdb
: