Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MKKECRDFYRQIQHTYND------IAVREDAVLSSILLSASNGLIKTSDVP-RVAYELTQQLENNEIE----KSFESLATV-KELKKSAKKLSERYEQNKVTTGLLSK----VFGNH
3DT5 Chain:A ((15-133))
RLKAIEDRLEKFYIPLIKAFSSYVYTAQTEDEIETIITCRRYLAGNNLLRV--LPMHFKFKADKIAGSANWTFYAKEDFEQWKEALDVLWEEFLEVLKEYYTLSGTEISLPEKPDWLIGYK
General information:
TITO was launched using:
RESULT:
Template:
3DT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15484 for 625 contacts (-24.8/contact) +
2D Compatibility (PS) -10526 + (NN) -2427 + (LL) -104
1D Compatibility (HY) -5600 + (ID) 650
Total energy: -34791.0 ( -55.67 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_3DT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DT5-query.scw
PDB file :
Tito_Scwrl_3DT5.pdb
: