Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVTMTISGEMILIEYYGENFPLHPQEWKDYHSFWQEDYIRFHFQTDIGTLTIYDGNY---DLTLLWG-----EPVHRIEKLYHQLLTDPIPVMVYGDERFQEAYRTENGQTKNLYLEHVCNVCKEAYEVLFKQINQKERNT
3AJV Chain:B ((61-107))
-----------------------------------------SLYLA--EKGVLEVAKPDGSSVGVEDLRTAVRGNPRFSMLYNIYRDLRERGFVVRSGLKFGSDFAVYRLGPGIDAAPFIVHAYSPEDNIDPVEIVRAGRLSHS
General information:
TITO was launched using:
RESULT:
Template:
3AJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19928 for 177 contacts (-112.6/contact) +
2D Compatibility (PS) -4071 + (NN) -3364 + (LL) 3272
1D Compatibility (HY) -800 + (ID) 250
Total energy: -25141.0 ( -142.04 by residue)
QMean score : 0.154
(partial model without unconserved sides chains):
PDB file :
Tito_3AJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AJV-query.scw
PDB file :
Tito_Scwrl_3AJV.pdb
: