Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMKKWFGLLFLGLALITLAACGQKTPEDIIKTELKDSYVGYSENPGSDYPFNDGDDVLTFNKKENSI-TNSQGQMTYFSVIPKEEVPAGTQRVIDELETKLKGTNNFTIIINSTVKNPTKKDSEGAYQIALSDSGKAIRIFELGREPRSFGYYDFSGKAK
1UCK Chain:A ((23-71))
----------------------------------------------ASDGPFPYSQDGVVFQNRESTLPTQSYGYYHEYTVITPGARTRGTRRIITGEATQEDYYTGDHYATFSLIDQTC-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1UCK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3460 for 232 contacts (-14.9/contact) +
2D Compatibility (PS) -5202 + (NN) -6098 + (LL) 5004
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -12956.0 ( -55.84 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_1UCK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UCK-query.scw
PDB file :
Tito_Scwrl_1UCK.pdb
: