Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPELSKRRQRQLKAQGYDLAFLSRIQPQGNIDFKKDDRSWMSGDGHHTVLHFYEYPSEDLDRFWLSDLMLIPGTRSFLSLYRANNRELKQEIKDAIEEKSTRITGNSKIVDNQQELDEIKDLTQLDREITKKNIAMLGMYVRNYSSSSTKEALFKKVEDIKDKTSNFKSTILSGELDFEYHAPFIPAQYQIDLPNRRRGIPIRAHDLAGGYFFNHTKLEDQRGVYMGWTPTKGAVNFNFLERDERRTRSFMILSGNPKMGQRSFLLKHTDGLYAKGNYIRNFDANGTFLDQTRQQHGLILDLSGEANRINIFQVFPTVTNEEGTEIDKKKSYKLHIEKLKSIFKLLNSEVTGDDLTTLGDMLNDFYIEEGLWARNPKLNPEKLKATDLVNDDYPILSDFILFADDYKRSLMAQSKPDEIEIKSVNRIYKTFNELLTTNAEMFEGTTEFQDISSEQVVTFDLSGLKGTPNLLNAQIFSVLSLVSADIVNNGKRSKQLLKANPHLTEMDMEHYIVNISEAQTLINPKYESSVELLADMIDTMGENFAGVVLSVNSLRGILFEAGAGNHKDPYVTAVQRIFGLMQYRVFAQTDETTIPLLANALTGSMNQSELETLPRLAKGQLFMNIAGVGNLVFNQQLLAPEIKRYGGIQ |
3R0D Chain:A ((131-292)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNG-EALLEEALRL-GADVVG----------AIPHF-EFTREYGVESLHKTFALAQ-KYDRLIDVHCDEIDDEQSRFVETVAALAHHEGMGARVTAS-----HTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITRVKEMLESGINVCFGHDDVFDPWYPLGTA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3R0D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44629 for 1236 contacts (-36.1/contact) +
2D Compatibility (PS) -16441 + (NN) -323 + (LL) 26856
1D Compatibility (HY) -6400 + (ID) 2200
Total energy: -43137.0 ( -34.90 by residue)
QMean score : 0.180
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