Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFAKEYPTTVLLVSLTTLVFLLMQLTYGSQAESSQVIFQFGGIQGDYLKAYPT---NLWRLISPIFVHIGWEHFLLNGLALYFVGQMGESIWGSLRFLILYILSGLM-GNIFTLFFTPHVVAAGASTSLFGVFSAIAIAGYFGKNP----YLKQVGKSYQVMILLNLFFNIFTPGVSLAGHVGGLVGGVLVAIFLTKQNGSLLFKTWQSILALMIFIIVSISLIGLSLV
3ZMI Chain:A ((4-174))
--------PVTWVMMIACVVVFIAMQIL-GDQEVMLWLAWPFD----------PTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWF--GGLSGVVYALMGYVWLRGE--RDPQSGIYLQRGLIIFALIWIVAGWFDL-----ANGAHIAGLAVGLAMAFVDSL--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3ZMI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123195 for 1224 contacts (-100.6/contact) +
2D Compatibility (PS) -15924 + (NN) -2959 + (LL) 5484
1D Compatibility (HY) -18000 + (ID) 1950
Total energy: -156544.0 ( -127.90 by residue)
QMean score : 0.228
(partial model without unconserved sides chains):
PDB file :
Tito_3ZMI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZMI-query.scw
PDB file :
Tito_Scwrl_3ZMI.pdb
: