Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTYRVKSDKDFQMIFSRGKNVANRKFVIYYLEKEQKHFRVGISVSKKLGNAVVRNAIKRKIRHVLLSQKTALQD-YDFVVIARKGVE----ELNYQALEKNLIHVLKIAGLI
1NZ0 Chain:A ((10-117))
----ERLRLRRDFLLIFKEGKSLQNEYFVVLFRKNGMDYSRLGIVVKRKFGKATRRNKLKRWVREIFRRNKGVIPKGFDIVVIPRKKLSEEFERVDFWTVREKLLNLLKRIEG-
General information:
TITO was launched using:
RESULT:
Template:
1NZ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67549 for 700 contacts (-96.5/contact) +
2D Compatibility (PS) -11286 + (NN) -6394 + (LL) 564
1D Compatibility (HY) -10400 + (ID) 1550
Total energy: -96615.0 ( -138.02 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_1NZ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NZ0-query.scw
PDB file :
Tito_Scwrl_1NZ0.pdb
: