Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLQENKTAIFDNVSKLALKAGRAPESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDKFLEKYQALKD---EKLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQKR---AQKPVKCFLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEETESLRKRLQA--RNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFFK
3SY1 Chain:A ((4-228))
-DIAHNLAQVRDKISAAATRCGRSPEEITLVAVSKTKPASAIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFAGPLQSNKSRLVAEHFDWCITIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLSAIPAPESEY---VRQFEVARQMAVAFAGLKTRY--PHIDTLALGQSDDMEAAIAAGSTMVAIGTAIFG
General information:
TITO was launched using:
RESULT:
Template:
3SY1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144480 for 1760 contacts (-82.1/contact) +
2D Compatibility (PS) -23601 + (NN) -9483 + (LL) 824
1D Compatibility (HY) -12800 + (ID) 2750
Total energy: -192290.0 ( -109.26 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_3SY1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SY1-query.scw
PDB file :
Tito_Scwrl_3SY1.pdb
: