Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MMDFYIKQIIIHQFSPNDTELVLSDTPLTLTPRIDDYFRKKLSKVFSDEAKRGYFGEDNVFMSHLQDDLYVSSCQIAQLWKEEFVISEDQKTNDLVFIQFDKDG---------MEHFAFLRISLKEQFAHVSENQEQPITITQNNLPSAAQTPDEALVVNKSSKQYYLIEKRIKHNGSF-ANYFSENLLQVQPEQSVKKSIKMVEQTAQKIAENF--NKDDFSFQSKMKSAIYKNLEEEQELSPEKLADQLFDDNLTARLTFVDELKDAIPGPVQVSDIDHSRQIKKLENQKLSLSNG-IELIVPNNVYQDAESVEFIQNPDGTYSILIKNIQDIQNK----- |
| 4P5W Chain:A ((31-394)) | TKRADPAELRTIFLKYASIEKNGEFFMSPNDFVTRYLNIFSQPNPKTVELLSGVVDQTKDGLI-------------SFQEFVAFESVLCAPDALFMVAFQLFDKAGKGEVTFEDVKQVFGQTTIHQHIPFNWDSEFVQLHFGKERKRHLTYAEFTQFLLEIQLEHAKQAFVQRDNARTGRVTAIDFRDIMVTIRPHVLT----PFVEECLVAAAGGTTSHQVSFSYFNGFNSLLN-NMELIRKIY-STLAGTRKDVEVT-KEEFVLAAQK--FGQVTPMEVDILFQLADLYEPRGRMTLADIERIAPPN-----------PDHVGGYKLAVATFAGIENKFGLYL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P5W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 46327 for 2139 contacts (21.7/contact) +
2D Compatibility (PS) -31299 + (NN) -13045 + (LL) 2728
1D Compatibility (HY) -6000 + (ID) 2700
Total energy: -3989.0 ( -1.86 by residue)
QMean score : 0.189
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