Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPQTLRRLDVKKQFIEKIEPFAHRQTLKSKAVNSSKTTMSIQRYNHSGTKIQLRIGYSKVLIRIFSNGKINLTHYDLFFDREETLEITDAFDNGVYTQDEVDGFIKQAKTFIKQALKGEV
1MP9 Chain:A ((39-72))
------------------------------------NVEYDPDQFPG----LIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIV
General information:
TITO was launched using:
RESULT:
Template:
1MP9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13827 for 158 contacts (-87.5/contact) +
2D Compatibility (PS) -3799 + (NN) -2092 + (LL) 2864
1D Compatibility (HY) -2400 + (ID) 350
Total energy: -19604.0 ( -124.08 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_1MP9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MP9-query.scw
PDB file :
Tito_Scwrl_1MP9.pdb
: