Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRVHITSIYGQSPRSIALISQKLVKDVGRQLGYDEMGIYFYNDHAET----H-------GER-S--------TRMDGIIAGLGRGDIVVFQVPTWNSTEFDELFLDKLQAY-GARIITFVHDIVPLMFESNFYLLDRVIDMYNRSDVVILPTKAMHDYLIEKGMTTSKVLYQEVWDHPVNID----------LPRPECQKVLSFAGDIQRFPF----VNDWK-----ENIPLIYYGDGSRL----------NSEANVHAQGWKDDVELMLSLSKRGGFGLCWSEDREELVERRYSRMNASYKLSTFLAAGLPIIANHDISSRDFIKQHGLGFTVET--LEEAVEKINNME--KETYDSYVENVEKIATLLRNGYITKKLLIDAVHMLYR |
| 2JJM Chain:A ((18-370)) | ------------------VVGTELGKQLAERGHEIHFITSGLP---KVYPNIYFHEVTVN-FQYPPYDLALASKMAEVA-QRENLDILHVHYAIPHA--ICAYLAK-QMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGIS---KILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQ--DNVAELLA-MSDLMLLL-----------SEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESV----YEQFRSEKIVSQYETIYY |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JJM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -160091 for 2302 contacts (-69.5/contact) +
2D Compatibility (PS) -31389 + (NN) -17697 + (LL) 3880
1D Compatibility (HY) -2800 + (ID) 1900
Total energy: -209997.0 ( -91.22 by residue)
QMean score : 0.389
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