Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLNDNNQKKWKNRTLTSSMEFAVTGIFTAFKEERNMRKHLVSAILVILAGLTFQVSMVEWLFLLLSIFLVITFEIINSAIENVVD-LASNYHFSMLAKNAKDMAAGAVLVVSLFAVLVGLIIFIPKILALLL
4BRB Chain:D ((25-119))
---------------------YSWKGLRAAWINEAAFRQEGVAVLLCVVIAAWLDVDAVTRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYH--ELSGRAKDLGSAAVLIAIIDAVITWAILLWSHFG----
General information:
TITO was launched using:
RESULT:
Template:
4BRB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52292 for 557 contacts (-93.9/contact) +
2D Compatibility (PS) -9966 + (NN) -6558 + (LL) 1520
1D Compatibility (HY) -12000 + (ID) 1650
Total energy: -80946.0 ( -145.32 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_4BRB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BRB-query.scw
PDB file :
Tito_Scwrl_4BRB.pdb
: