Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAFADVAKMKKIKEDIKSHEGQMVELTLENGRKREKNKIGRLIEV--YPSLFIVEYKDTAAVPGAIDNTYVESYTYSDILTEKTLIRYFDDESAE
1LJO Chain:A ((6-46))
-------------PNQMVKSMVGKIIRVEMKGEE---NQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQ-----------
General information:
TITO was launched using:
RESULT:
Template:
1LJO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11544 for 179 contacts (-64.5/contact) +
2D Compatibility (PS) -3898 + (NN) 1548 + (LL) 2100
1D Compatibility (HY) -3600 + (ID) 400
Total energy: -15794.0 ( -88.23 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_1LJO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LJO-query.scw
PDB file :
Tito_Scwrl_1LJO.pdb
: