Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-------MKQELVLRWTFYFA----GLII-------LAFGVSLTI-EGKALGISPWDAFHYSLFQHF------------------GLTVGQWSIIIGALIVGFTS---LFTRAWPKIG-----------ALLNMVLIGVFIDFFN--FILPALSTYTGSIIVFSLGVVLIGYGVGVYVSAGLGAGPRDSLMMLITEKTGWNVQWVRNGMELTILFAAWGMGGPIGFGTILTAILTGLILRF-----SLPQSIQLLNYAVARRTAAVKASPPVH----------
2VDW Chain:B ((1-287))MDEIVKNIREGTHVLLPFYETLPELNLSLGKSPLPSLEYGANYFLQISRVNDLNRMPTDMLKLFTHDIMLPESDLDKVYEILKINSVKYYGRSTKADAVVADLSARNKLFKRERDAIKSTENNLYISDYKMLTFDVFRPLFDFVNEKYCIIKLPTLFGRGVIDTMRIYCSLFKNVRLLKCVSDSWLKDSAIMVASDVCKKNLDLFMSHVKSVTKSSSWKDVNSVQFSILNNPVDTEFINKFLEFSNRVYEALYYVHSLLYSSMTSDSKSIENKHQRRLVKLLL


General information:
TITO was launched using:
RESULT:

Template: 2VDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 852 -169078 -198.45 -786.41
target 2D structure prediction score : 0.45
Monomeric hydrophicity matching model chain B : 0.66

3D Compatibility (PKB) : -198.45
2D Compatibility (Sec. Struct. Predict.) : 0.45
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.230

(partial model without unconserved sides chains):
PDB file : Tito_2VDW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2VDW-query.scw
PDB file : Tito_Scwrl_2VDW.pdb: