Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----MIHPPQKNSDEGTLF-LSSNLFAPPKIPS-----------------NPRTPVLLAFYRIVNITQN-HTANKKRNIFSTHSLK-----AQTKHYKFEISWY----IFLHEFSTNCIFMIEFQLS-------
1VR8 Chain:A ((5-141))KIHHHHHHPPEAYSLDTAIFVLETRDYRLSDVKEIDSYGDVEMKGKVAVFETEYGPVFLYVYKGEEAKKIWKKLNGRVSIRSVLDLPNMGKFSTVSNGKKIVAWWRKNWLFIVEGKNGVEEFVKHVYRVYEEMKQ


General information:
TITO was launched using:
RESULT:

Template: 1VR8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 315 -43302 -137.47 -455.81
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.62

3D Compatibility (PKB) : -137.47
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.399

(partial model without unconserved sides chains):
PDB file : Tito_1VR8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VR8-query.scw
PDB file : Tito_Scwrl_1VR8.pdb: