Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAKKSKVAKELKRQQLVEQYAGIRRELKEKGDYEALSKLPRDSAPGRLHNRCMVTGRPRAYMRKFKMSRIAFRELAHKGQIPGVKKASW
4GKK Chain:N ((18-60))----------------------------------------------RAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW


General information:
TITO was launched using:
RESULT:

Template: 4GKK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain N - contact count / total energy / energy per contact / energy per residue : 113 -24632 -217.98 -572.83
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain N : 0.75

3D Compatibility (PKB) : -217.98
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.761

(partial model without unconserved sides chains):
PDB file : Tito_4GKK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4GKK-query.scw
PDB file : Tito_Scwrl_4GKK.pdb: