Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFEWSDTDLMVRDAVRQFIDKEIRPHQDA-LETGELSPYPIARKLFSQFGLDVLLAESVNQMLDGERAKREKRDSSGSFGLADQASMVAVLVSELAGVSIGLLSTVAVSLGLGAATIMSRGTLAQQERWVPTLVTLEKIAAWAITEPDSGSDAFGGMKTHVTRDGEDYILNGHKTFITNGPYADVLVVYAKLADGEPASDWRNRPVLVFVLDAGMPGLTQGKPFKKMGMMSSPTGELFFDNVRLTPD--RLLCAEGDGRDSARANFAVERLGVALMSLGIINECHRLCVDYAKTRTLWGRNIGQFQLIQLKLAKMEVARINVQNMVFQAIERLKAGKQLTLAEASAIKLYSSEAATDVAMEAVQLFGGNGYMAEYRVEQLARDAKSLMIYAGSNEVQVTHIAKGLLGEPASRA |
| 3SF6 Chain:A ((37-403)) | ----------IRDTVRSVVQRRIKPHIASWYEDGELP----ARELAVELGELGLLGMHLK--------------GYGCAGMSAVAYGLACL--ELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDP-AGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWARTDEG----------IRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRL-PDSARLPGATSLGAPLRCLNEA--RFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTL-EYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIEIARTARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQALTGVGAFR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SF6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204381 for 3277 contacts (-62.4/contact) +
2D Compatibility (PS) -39725 + (NN) -16286 + (LL) 2904
1D Compatibility (HY) -15600 + (ID) 6500
Total energy: -279588.0 ( -85.32 by residue)
QMean score : 0.453
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