Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIISDGIYNLIIFVL------AVYVGYHVVWNVTPALH--TPLMAVTNAISAIVIVGAMLAAALTVTPLGKAMGTLAVALAAV-------NVFGGFLVTRRMLEMFKKKAPKAGGH
1HIW Chain:A ((8-122))
--VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAAAD
General information:
TITO was launched using:
RESULT:
Template:
1HIW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93747 for 641 contacts (-146.3/contact) +
2D Compatibility (PS) -10172 + (NN) 451 + (LL) 132
1D Compatibility (HY) 4800 + (ID) 800
Total energy: -99336.0 ( -154.97 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_1HIW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HIW-query.scw
PDB file :
Tito_Scwrl_1HIW.pdb
: