Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNNNKKCAFFLLPILAGDSVPALAEGFLEDSRASLALRNFYMNRDFRDGAGRAKSEEWAQGFLFDYRSGYTEGTLGVGLDLLGKLGVRLDSGAGRSGTGLLPLRDDGSAAGDYARLDATAKLRLSRSELKVGGLVPKLPTIQPNYGRLFPQVFQGALLTSGELSGLSLNLGRLTEVSQRNEAGTSDLALFNRNRRFAGAA--QADRFDLAGLDYRIAPDWTGSYHYGELEQVYAQHFLGLKGRIGIAAD-SLESDLRLALSRDTGGARGGRIDNRSFSGSLTYRLRNGQAFGLGYQRMSGDHGFPYL---EGTDPYLVNFGQYNDFAEAGESSWQLRYDCDFAPLGVPGLSLMTRYFSGH---GAKPK-----------GADGSREWERDSDLRYVLQGGALKGLGLVWRNATYRS-AFSRDIDENRLYLTYELPLF |
| 2ODJ Chain:A ((5-417)) | ------------------SDQAEAKGFIEDSSLDLLLRNYYFNRDGK-------RVDWTQGFLTTYESGFTQGTVGFGVDAFGYLGLKLDGT-------------------DYSRAGGAVKVRISKTMLKWGEMQPTAPVFAAGGSRLFPQTATGFQLQSSEFEGLDLEAGHFTE------------------ELYATYAGETAKSADFIGGRYAITDNLSASLYGAELEDIYRQYYLNSNYTIPLASDQSLGFDFNIYRTNDEGKAKAGDISNTTWSLAAAYTL-DAHTFTLAYQKVHGDQPFDYIGFG---SIFLANSVQYSDFNGPGEKSWQARYDLNLASYGVPGLTFMVRYINGKDIDGTKMSDNNVGYKNYGYGEDG-KHHETNLEAKYVVQSGPAKDLSFRIRQAWHRANADQGEGDQNEFRLIVDYPL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2ODJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 13781 for 2694 contacts (5.1/contact) +
2D Compatibility (PS) -34897 + (NN) -1067 + (LL) 2168
1D Compatibility (HY) -22400 + (ID) 7150
Total energy: -49565.0 ( -18.40 by residue)
QMean score : 0.164
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