Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL
1CLU Chain:A ((1-166))
MTEYKLVVVGAPGVGKSALTIQLIQNHFVDE------DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQH----------------
General information:
TITO was launched using:
RESULT:
Template:
1CLU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98813 for 1300 contacts (-76.0/contact) +
2D Compatibility (PS) -17271 + (NN) -4049 + (LL) 1224
1D Compatibility (HY) -18800 + (ID) 4400
Total energy: -142109.0 ( -109.31 by residue)
QMean score : 0.704
(partial model without unconserved sides chains):
PDB file :
Tito_1CLU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CLU-query.scw
PDB file :
Tito_Scwrl_1CLU.pdb
: