Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
4M1Y Chain:B ((2-170))
MTEYKLVVVGACGVGKSALTIQLIQNHFV--------DSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK--------------------
General information:
TITO was launched using:
RESULT:
Template:
4M1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108878 for 1304 contacts (-83.5/contact) +
2D Compatibility (PS) -17735 + (NN) -6824 + (LL) 1896
1D Compatibility (HY) -20000 + (ID) 7550
Total energy: -159091.0 ( -122.00 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_4M1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M1Y-query.scw
PDB file :
Tito_Scwrl_4M1Y.pdb
: