Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLLLLTLPLLSSLVHAAPSLAMPREGIVGGQEASGNKWPWQVSLRVNDTYWMHFCGGSLIHPQWVLTAAHCVGPNKADPNKLRVQLRKQYL--YYHD-HLLTVSQIISHPDFYIAQDGADIALLKLTNPVNITSNVHTVSLPPASETFPSGTLCWVTGWGNINNDVSLPPPFPLEEVQVPIVENRLCDLKYHKGLNTGDNVHIVRDDMLCAG--NEGHDSCQGDSGGPLVCKVEDTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIYRYVPKYF
3DFL Chain:A ((1-241))
----------------------------ITGGSSAVAGQWPWQVSITYEG---VHVCGGSLVSEQWVLSAAHCF-PSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAANASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALYNIDAKP-EEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKV----
General information:
TITO was launched using:
RESULT:
Template:
3DFL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167123 for 1996 contacts (-83.7/contact) +
2D Compatibility (PS) -25542 + (NN) -13781 + (LL) 2592
1D Compatibility (HY) -21200 + (ID) 5150
Total energy: -230204.0 ( -115.33 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_3DFL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DFL-query.scw
PDB file :
Tito_Scwrl_3DFL.pdb
: