Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNVPHKSSLPEGIRPGTVLRIRGLV-PPNASRFHVNLLCGEEQGSDAALHFNPRL-DTSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVRLVEVGGDVQLDSVRIF
3LSE Chain:A ((10-142))
---VPFSGTIQGGLQDGLQITVNGTVLSSSGTRFAVNFQTGFS-GNDIAFHFNPRFEDGGYVVCNTRQNGSWGPEERKTHMPFQKGMPFDLCFLVQSSDFKVMVNGILFVQYFHRVPFHRVDTISVNGSVQLSYISF-
General information:
TITO was launched using:
RESULT:
Template:
3LSE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75519 for 976 contacts (-77.4/contact) +
2D Compatibility (PS) -13960 + (NN) -7335 + (LL) 352
1D Compatibility (HY) -12800 + (ID) 2450
Total energy: -111712.0 ( -114.46 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_3LSE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LSE-query.scw
PDB file :
Tito_Scwrl_3LSE.pdb
: