Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAQRQPHSPNQTLISITNDTESSSSVVSNDNTNKGWSGDNSPGIEALCAIYITYAVIISVGILGNAILIKVFFKTKSMQTVPNIFITSLAFGDLLLLLTCVPVDATHYLAEGWLFGRIGCKVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPSNAILKTCVKAGCVWIVSMIFA-LPEAIFSNVYTFRDPNKNMTFES--CTSYPVSKKLLQEIHSLLCFLVFYIIPLSIISVYYSLIARTLYKSTLNIPTEEQSHARKQIESRKRIAR------TVLVLVALFALCWLPNHLLYLYHSFTSQTYVDPSAMHFIFTIFSRVLAFSNSCVNPFALYWLSKSFQKHFKAQL-FCCKAERPEPPVADTSLTTLAVMGTVPGTGSIQMSEISVTSFTGCSVKQAEDRF |
2Y04 Chain:A ((19-300)) | ------------------------------------------------------ALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLP--IMMHWWRDEDPQALKCYQDPGCCDFVTNRA--------------YAIASSIISFYIPLLIMIFVALRVYREAKEQ--------SRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPD-----WLFVAFNW-LGYANSAMNPI-IYCRSPDFRKAFKRLLA------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y04.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176724 for 1902 contacts (-92.9/contact) +
2D Compatibility (PS) -25704 + (NN) 1352 + (LL) 8256
1D Compatibility (HY) -29200 + (ID) 4100
Total energy: -226120.0 ( -118.89 by residue)
QMean score : 0.274
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