Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDSFNYTTPDYGHYDDKDTLDLNTPVDKTSNTLRVPDILALVIFAVVFLVGVLG---NALVVWVTAFEAK-RTINAIWFLNLAVADFLSCLA--LPILFTSIVQHHHWPFGGAACSILPSLILLNMYASILLLATISADRFLLVFKPIWCQNFR-GAGLAWIACAVAWGLALLLTIPSFLYRVVREEYFPP--KVLCGVDY--SHDKRRERAVAIVRLVLGFLWPLLTLTICY---TFILLRTWSRRATRST------KTLKVVVAVVASFFIFWLPYQVTGIMMSFLEPS--SPTFLLLKKLDSLCVSFAYINCCINPIIYVVAGQGFQGRLRKSLPSLLRNVLTEESVVRESKSFTRSTVDTMAQKTQAV |
| 2X72 Chain:A ((45-327)) | --------------------------------------------AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSL--HGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPM--SNFRFGENHAIMGVAFTWVMALACAAPPL---VGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAF------FAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2X72.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -265708 for 1913 contacts (-138.9/contact) +
2D Compatibility (PS) -26344 + (NN) -8954 + (LL) 5604
1D Compatibility (HY) -4800 + (ID) 800
Total energy: -301002.0 ( -157.35 by residue)
QMean score : 0.251
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