Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MERAPPDGPLNASGALAGEAAAAGGARGFSAAWTAVLAALMALLIVATVLGNALVMLAFVADSSLRTQNNFFLLNLAISDFLVGAFCIPLYVPYVL-TGRWTFGRGLCKLWLVVDYLLCTSSAFNIVLISYDRFLSVTRAVSYRAQQGDTR-RAVRKMLLVWVLAFLLYGPA-ILSWEYLSGGSSIPEGHCYAEFFYNWYFLITASTLEFFTPF--LSVTFFNLSIY---------------LNIQRRTRLRLDGAREA---------AGPEPPPEAQPSPPPPPGCWGCWQKGHGEAMPLHRYGVGEAAVGAEAGEATLGGGGGGGSVASPTSSSGSSSRGTERPRSLKRGSKPSASSASLEKRMKMVSQSFTQRF--RLSRDRKVAKSLAVIVSIFGLCWAPYTLLMIIRAACH--GHCVPDYWYETSFWLLWANSAVNPVLYPLCHHSFRRAFTKLLCPQKLKIQPHSSLEHCWK |
| 4NC3 Chain:A ((33-407)) | -------------------------------------ALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPI--QANQYNSRATAFIKITVVWLISIGIAIPVPIKGIET-VDNPNNITCVLTKERFGD--FMLFGSLAAFFTPLAIMIVTYF-LTIHALQKKAADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRA-------------------------------KDFRHGF-DILVGQIDDALKLANEG-----------------------------KVKEAQAAAE-QLKTTRNAYIQKYLQTISNEQRASKVLGIVFFLFLLMWCPFFITNITLVLCDSCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITCNYR------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -218855 for 2276 contacts (-96.2/contact) +
2D Compatibility (PS) -32593 + (NN) -6392 + (LL) 2060
1D Compatibility (HY) -30800 + (ID) 4700
Total energy: -291280.0 ( -127.98 by residue)
QMean score : 0.239
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