Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQAAGHPEPLDSRGSFSLPTMGANVSQDNGTGHNATFSEPLPFLYVLLPAVYSGICAVGLTGNTAVILVILRAPKMKTVTNVFILNLAVADGLFTLVLPVNIAEHLLQY-WPFGELLCKLVLAVDHYNIFSSIYFLAVMSVDRYLVVLATVRSRHMPWRTYRGAKVASLCVWLGVTVLVLPFFSFAGVYSNELQVPSCGLSFPWPEQVWFKASRVYTL---VLGFVLPVCTICVLYTDLLRRL------------------------RAVRLRSGAK-------ALGKAR---------RKVTVLVLVVLAVCLLCWTPFHLASVVALTTDLP-QTPLVISM------SYVIT-SLSYANSCLNPFLYAFLDDNFRKNFRSILRC |
| 4XNV Chain:A ((48-382)) | ------------------------------------------FQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYP-KS--LGRLKKKNAICISVLVWLIVVVAISPILFYSGTGVRKNKTITC---YDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -237161 for 2017 contacts (-117.6/contact) +
2D Compatibility (PS) -27400 + (NN) -6442 + (LL) 1728
1D Compatibility (HY) -30000 + (ID) 4450
Total energy: -303725.0 ( -150.58 by residue)
QMean score : 0.214
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